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Experiment Overview

Repository ID: FR-FCM-Z244 Experiment name: Identification of disease-associated immune signatures following bone marrow transplantation MIFlowCyt score: 53.75%
Primary researcher: Felix Hartmann PI/manager: Felix Hartmann Uploaded by: Felix Hartmann
Experiment dates: 2018-01-01 - 2018-12-31 Dataset uploaded: May 2019 Last updated: Jul 2019
Keywords: [CyTOF] [Bone marrow transplantation] [clinical trial] [clinical] Manuscripts: [31315057]
Organizations: Stanford University, Stanford, (USA)
Purpose: Comprehensively monitor immune composition across time and identify disease-associated immune signatures following bone marrow transplantation using the described reference panel.
Conclusion: Patients experiencing GvHD displayed a reduced frequency of CD27- B cells and lower frequencies of naive CD4+ T cells.
Comments: None
Funding: Not disclosed
Quality control: Samples are matched across various timepoints (days 30 and 90) post bone marrow transplantation


Experiment variables

Timepoints
· day_30 BMT01_D30.fcs · BMT02_D30.fcs · BMT03_D30.fcs · BMT04_D30.fcs · BMT05_D30.fcs · BMT06_D30.fcs · BMT07_D30.fcs · BMT08_D30.fcs · BMT09_D30.fcs · BMT10_D30.fcs · BMT11_D30.fcs · BMT12_D30.fcs · BMT13_D30.fcs · BMT14_D30.fcs · BMT15_D30.fcs
· day_90 BMT01_D90.fcs · BMT02_D90.fcs · BMT03_D90.fcs · BMT04_D90.fcs · BMT05_D90.fcs · BMT06_D90.fcs · BMT07_D90.fcs · BMT09_D90.fcs · BMT11_D90.fcs · BMT12_D90.fcs · BMT13_D90.fcs · BMT14_D90.fcs · BMT15_D90.fcs

Sample Type
· PBMC BMT01_D30.fcs · BMT01_D90.fcs · BMT02_D30.fcs · BMT02_D90.fcs · BMT03_D30.fcs · BMT03_D90.fcs · BMT04_D30.fcs · BMT04_D90.fcs · BMT05_D30.fcs · BMT05_D90.fcs · BMT06_D30.fcs · BMT06_D90.fcs · BMT07_D30.fcs · BMT07_D90.fcs · BMT08_D30.fcs · BMT09_D30.fcs · BMT09_D90.fcs · BMT10_D30.fcs · BMT11_D30.fcs · BMT11_D90.fcs · BMT12_D30.fcs · BMT12_D90.fcs · BMT13_D30.fcs · BMT13_D90.fcs · BMT14_D30.fcs · BMT14_D90.fcs · BMT15_D30.fcs · BMT15_D90.fcs

Individuals
· BMT01 BMT01_D30.fcs · BMT01_D90.fcs
· BMT02 BMT02_D30.fcs · BMT02_D90.fcs
· BMT03 BMT03_D30.fcs · BMT03_D90.fcs
· BMT04 BMT04_D30.fcs · BMT04_D90.fcs
· BMT05 BMT05_D30.fcs · BMT05_D90.fcs
· BMT06 BMT06_D30.fcs · BMT06_D90.fcs
· BMT07 BMT07_D30.fcs · BMT07_D90.fcs
· BMT08 BMT08_D30.fcs
· BMT09 BMT09_D30.fcs · BMT09_D90.fcs
· BMT10 BMT10_D30.fcs
· BMT11 BMT11_D30.fcs · BMT11_D90.fcs
· BMT12 BMT12_D30.fcs · BMT12_D90.fcs
· BMT13 BMT13_D30.fcs · BMT13_D90.fcs
· BMT14 BMT14_D30.fcs · BMT14_D90.fcs
· BMT15 BMT15_D30.fcs · BMT15_D90.fcs

Conditions
· unstimulated BMT01_D30.fcs · BMT01_D90.fcs · BMT02_D30.fcs · BMT02_D90.fcs · BMT03_D30.fcs · BMT03_D90.fcs · BMT04_D30.fcs · BMT04_D90.fcs · BMT05_D30.fcs · BMT05_D90.fcs · BMT06_D30.fcs · BMT06_D90.fcs · BMT07_D30.fcs · BMT07_D90.fcs · BMT08_D30.fcs · BMT09_D30.fcs · BMT09_D90.fcs · BMT10_D30.fcs · BMT11_D30.fcs · BMT11_D90.fcs · BMT12_D30.fcs · BMT12_D90.fcs · BMT13_D30.fcs · BMT13_D90.fcs · BMT14_D30.fcs · BMT14_D90.fcs · BMT15_D30.fcs · BMT15_D90.fcs

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