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Experiment: Additional example data to analyse high-dimensional cytometry data using FlowSOM
ID: FR-FCM-Z2TQ
Primary Researcher: Katrien Quintelier
MIFlowCyt Score: 33.50%

Experiment Overview

Repository ID:	FR-FCM-Z2TQ	Experiment name:	Additional example data to analyse high-dimensional cytometry data using FlowSOM	MIFlowCyt score:	33.50%
Primary researcher:	Katrien Quintelier	PI/manager:	Yvan Saeys	Uploaded by:	Katrien Quintelier
Experiment dates:	2020-08-20 -	Dataset uploaded:	Aug 2020	Last updated:	Nov 2020
Keywords:	None		Manuscripts:
Organizations:	VIB-Ghent University, Inflammation Research Center, Ghent, (Belgium)
Purpose:	In addition to the data from FR-FCM-ZZQY, a general (3) and lymphocyte (1) flow cytometry panel on murine spleen data was applied, to demonstrate the computational analysis using FlowSOM.
Conclusion:	None
Comments:	None
Funding:	Not disclosed
Quality control:	None

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The following open access article describes how to upload and annotate flow cytometry data sets: Spidlen J, Breuer K and Brinkman R. Preparing a Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) Compliant Manuscript Using the International Society for Advancement of Cytometry (ISAC) FCS File Repository (FlowRepository.org). Current Protocols in Cytometry, UNIT 10.18, July 2012.
We also have a Quick start guide and a FAQ section.
You may download slides from our Workshop at CYTO 2012: Publishing MIFlowCyt Compliant Data to ISAC’s FlowRepository.org for Cytometry A and Other Journals
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Citing FlowRepository

Please reference us by citing:

Spidlen J, Breuer K, Rosenberg C, Kotecha N and Brinkman RR. FlowRepository - A Resource of Annotated Flow Cytometry Datasets Associated with Peer-reviewed Publications. Cytometry A. 2012 Sep; 81(9):727-31..

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FCS files
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Attachments
- Compensation.csv
- General_panel.wsp
- lympho_labels.rds