Experiment Overview
| Repository ID: | FR-FCM-Z3XT | Experiment name: | Cancer COVID NatMed | MIFlowCyt score: | 59.36% |
| Primary researcher: | Nicholas Han | PI/manager: | Nicholas Han | Uploaded by: | Nicholas Han |
| Experiment dates: | 2020-04-01 - | Dataset uploaded: | Apr 2021 | Last updated: | May 2021 |
| Keywords: | [Cancer] [Lymphocytes] [human] [COVID-19] | Manuscripts: | |||
| Organizations: |
University of Pennsylvania, Department of Hematology and Oncology, Philadelphia, Pennsylvania (United States)
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| Purpose: | To study the lymphocyte populations in COVID-19 patients both with and without cancer. | ||||
| Conclusion: | Five immune phenotypes identified through EMD clustering analysis of patient UMAP reductions, driven by balances of CD4, CD8, and B cells. | ||||
| Comments: | Conducted UMAP dimensionality reduction of lymphocytes, then clustered patients using Earth Mover's Distance. | ||||
| Funding: | Not disclosed | ||||
| Quality control: | None | ||||
Experiment variables
| Individuals | |
|---|---|
| · Heme | export_export_COVID19_994523 d7_Live_Lymphocytes.fcs · export_export_COVID19_994581_d0_Live_Lymphocytes.fcs |
| · Solid | export_export_COVID19_994551_Live_Lymphocytes.fcs · export_export_COVID19_994555_Live_Lymphocytes.fcs · export_export_COVID19_994571_Live_Lymphocytes.fcs · export_export_COVID19_994590_d0_Live_Lymphocytes.fcs · export_export_COVID19_994591_d0_Live_Lymphocytes.fcs · export_export_COVID19_994659_d0_Live_Lymphocytes.fcs |
| · Non-Cancer COVID | export_export_COVID19_994524 d7_Live_Lymphocytes.fcs · export_export_COVID19_994534_Live_Lymphocytes.fcs · export_export_COVID19_994537 d7_Live_Lymphocytes.fcs · export_export_COVID19_994538 d7_Live_Lymphocytes.fcs · export_export_COVID19_994543 d7_Live_Lymphocytes.fcs · export_export_COVID19_994552_Live_Lymphocytes.fcs · export_export_COVID19_994558_Live_Lymphocytes.fcs · export_export_COVID19_994559_Live_Lymphocytes.fcs · export_export_COVID19_994565_d7_Live_Lymphocytes.fcs · export_export_COVID19_994567_Live_Lymphocytes.fcs · export_export_COVID19_994568_d7_Live_Lymphocytes.fcs · export_export_COVID19_994570_Live_Lymphocytes.fcs · export_export_COVID19_994572_Live_Lymphocytes.fcs · export_export_COVID19_994573_Live_Lymphocytes.fcs · export_export_COVID19_994574_Live_Lymphocytes.fcs · export_export_COVID19_994582_d0_Live_Lymphocytes.fcs · export_export_COVID19_994584_d0_Live_Lymphocytes.fcs · export_export_COVID19_994585_d0_Live_Lymphocytes.fcs · export_export_COVID19_994587_d0_Live_Lymphocytes.fcs · export_export_COVID19_994588_d0_Live_Lymphocytes.fcs · export_export_COVID19_994589_d0_Live_Lymphocytes.fcs · export_export_COVID19_994613_d7_Live_Lymphocytes.fcs · export_export_COVID19_994616_d7_Live_Lymphocytes.fcs · export_export_COVID19_994617_d7_Live_Lymphocytes.fcs · export_export_COVID19_994622_d7_Live_Lymphocytes.fcs · export_export_COVID19_994631_d0_Live_Lymphocytes.fcs · export_export_COVID19_994632_d0_Live_Lymphocytes.fcs · export_export_COVID19_994633_d0_Live_Lymphocytes.fcs · export_export_COVID19_994634_d0_Live_Lymphocytes.fcs · export_export_COVID19_994635_d0_Live_Lymphocytes.fcs · export_export_COVID19_994636_d0_Live_Lymphocytes.fcs · export_export_COVID19_994637_d0_Live_Lymphocytes.fcs · export_export_COVID19_994639_d0_Live_Lymphocytes.fcs · export_export_COVID19_994640_d0_Live_Lymphocytes.fcs · export_export_COVID19_994641_d0_Live_Lymphocytes.fcs · export_export_COVID19_994660_d0_Live_Lymphocytes.fcs |
| · Non-COVID ICU | export_export_COVID19_994586_d0_Live_Lymphocytes.fcs |
| Sample Type | |
|---|---|
| · Lymphocytes | export_export_COVID19_994523 d7_Live_Lymphocytes.fcs · export_export_COVID19_994524 d7_Live_Lymphocytes.fcs · export_export_COVID19_994534_Live_Lymphocytes.fcs · export_export_COVID19_994537 d7_Live_Lymphocytes.fcs · export_export_COVID19_994538 d7_Live_Lymphocytes.fcs · export_export_COVID19_994543 d7_Live_Lymphocytes.fcs · export_export_COVID19_994551_Live_Lymphocytes.fcs · export_export_COVID19_994552_Live_Lymphocytes.fcs · export_export_COVID19_994555_Live_Lymphocytes.fcs · export_export_COVID19_994558_Live_Lymphocytes.fcs · export_export_COVID19_994559_Live_Lymphocytes.fcs · export_export_COVID19_994565_d7_Live_Lymphocytes.fcs · export_export_COVID19_994567_Live_Lymphocytes.fcs · export_export_COVID19_994568_d7_Live_Lymphocytes.fcs · export_export_COVID19_994570_Live_Lymphocytes.fcs · export_export_COVID19_994571_Live_Lymphocytes.fcs · export_export_COVID19_994572_Live_Lymphocytes.fcs · export_export_COVID19_994573_Live_Lymphocytes.fcs · export_export_COVID19_994574_Live_Lymphocytes.fcs · export_export_COVID19_994581_d0_Live_Lymphocytes.fcs · export_export_COVID19_994582_d0_Live_Lymphocytes.fcs · export_export_COVID19_994584_d0_Live_Lymphocytes.fcs · export_export_COVID19_994585_d0_Live_Lymphocytes.fcs · export_export_COVID19_994586_d0_Live_Lymphocytes.fcs · export_export_COVID19_994587_d0_Live_Lymphocytes.fcs · export_export_COVID19_994588_d0_Live_Lymphocytes.fcs · export_export_COVID19_994589_d0_Live_Lymphocytes.fcs · export_export_COVID19_994590_d0_Live_Lymphocytes.fcs · export_export_COVID19_994591_d0_Live_Lymphocytes.fcs · export_export_COVID19_994613_d7_Live_Lymphocytes.fcs · export_export_COVID19_994616_d7_Live_Lymphocytes.fcs · export_export_COVID19_994617_d7_Live_Lymphocytes.fcs · export_export_COVID19_994622_d7_Live_Lymphocytes.fcs · export_export_COVID19_994631_d0_Live_Lymphocytes.fcs · export_export_COVID19_994632_d0_Live_Lymphocytes.fcs · export_export_COVID19_994633_d0_Live_Lymphocytes.fcs · export_export_COVID19_994634_d0_Live_Lymphocytes.fcs · export_export_COVID19_994635_d0_Live_Lymphocytes.fcs · export_export_COVID19_994636_d0_Live_Lymphocytes.fcs · export_export_COVID19_994637_d0_Live_Lymphocytes.fcs · export_export_COVID19_994639_d0_Live_Lymphocytes.fcs · export_export_COVID19_994640_d0_Live_Lymphocytes.fcs · export_export_COVID19_994641_d0_Live_Lymphocytes.fcs · export_export_COVID19_994659_d0_Live_Lymphocytes.fcs · export_export_COVID19_994660_d0_Live_Lymphocytes.fcs |
