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Experiment Overview

Repository ID: FR-FCM-Z4N2 Experiment name: Bystander CD4+ T cells infiltrate human tumors and are phenotypically distinct MIFlowCyt score: 19.50%
Primary researcher: yannick SIMONI PI/manager: yannick SIMONI Uploaded by: yannick SIMONI
Experiment dates: 2021-11-05 - 2021-11-06 Dataset uploaded: Nov 2021 Last updated: Nov 2021
Keywords: None Manuscripts:
Organizations: None
Purpose: Tumor-specific T cells likely underpin effective immune checkpoint-blockade therapies. Yet, most studies focus on Treg cells and CD8+ tumor-infiltrating lymphocytes (TILs). Here we study CD4+ TILs in human lung and colorectal cancers and observe that non-Treg CD4+ TILs average more than 70% of total CD4+ TILs in both cancer types. Leveraging high dimensional analyses including mass cytometry, we reveal that CD4+ TILs are phenotypically heterogeneous, within each tumor and across patients. Consistently, we find different subsets of CD4+ TILs showing characteristics of effectors, tissue resident memory (Trm) or exhausted cells (expressing PD-1, CTLA-4 and CD39). In both cancer types, the frequencies of CD39? non-Treg CD4+ TILs strongly correlate with frequencies of CD39? CD8+ TILs, which we and others have previously shown to be enriched for cells specific for cancer-unrelated antigens (bystanders). Ex-vivo, we demonstrate that CD39? CD4+ TILs can be specific for cancer unrelated antigens, such as HCMV epitopes.
Conclusion: Overall, our findings highlight that CD4+ TILs can also recognize cancer-unrelated antigens and suggest measuring CD39 expression as a straightforward way to quantify or isolate bystander CD4+ T cells.
Comments: None
Funding: Not disclosed
Quality control: None
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