Experiment Overview
| Repository ID: | FR-FCM-Z62A | Experiment name: | Immune signatures of immune checkpoint inhibitor-induced neurological immune related adverse events | MIFlowCyt score: | 69.75% |
| Primary researcher: | Axel Schulz | PI/manager: | Axel Schulz | Uploaded by: | Axel Schulz |
| Experiment dates: | 2019-04-01 - 2022-01-31 | Dataset uploaded: | Jan 2023 | Last updated: | Feb 2023 |
| Keywords: | [mass cytometry] [CyTOF] [PD-L1] [PD-1] [immunotherapy] [CTLA-4] [immune checkpoint inhibitors] [immune related adverse events] [neurological immune related adverse events] [neurotoxicity] | Manuscripts: | |||
| Organizations: |
Charité University Medicine, Berlin, (Germany)
German Rheumatism Research Center Berlin, a Leibniz-Institute (DRFZ), Immunemonitoring, Berlin, (Germany) |
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| Purpose: | Neurological immune related adverse events (irAE-n) are an increasingly recognized complication of immune checkpoint inhibitor (ICI) treatment. To overcome diagnostic and therapeutic challenges, a better mechanistic understanding of irAE-n is paramount. | ||||
| Conclusion: | Results: During acute illness, patients with irAE-n presented higher frequencies of CD8+ effector memory type (EM-)1 T cells compared to controls. Presence of multiple immunotoxicities was associated with higher CD8+ EM1 T cell counts. While there were no B cell changes in the overall cohort, we detected a marked decrease of IgD-CD11c+CD19highCD20highCD21low B cells and IgD-CD24+CD21high B cells in a subgroup of patients with ICI-induced autoantibody-positive irAE-n. We further identified signatures indicative of enhanced chemotaxis, inflammation, and angiogenesis in irAE-n patients and discovered CXCL10 as a marker candidate to diagnose and potentially predict irAE-n. Conclusions: We demonstrate profound and partly subgroup-specific immune cell dysregulations in irAE-n patients, which may guide future biomarker development and targeted treatment approaches. | ||||
| Comments: | Methods: In this observational cohort study, we collected serum samples and PBMCs from 35 consecutive cancer patients with irAE-n (n = 3 pre-ICI, n = 35 post-ICI) and 43 cancer control patients without high-grade neurological or non-neurological irAEs (n = 43 pre- and post-ICI). Patients received either anti-programmed cell death protein (PD)-1 or anti-PD ligand-1 monotherapy or anti-PD-1/anti-cytotoxic T-lymphocyte associated protein-4 combination therapy. Most common tumor entities were melanoma, lung cancer and hepatocellular carcinoma. Peripheral blood immune profiling was performed using 48-marker mass cytometry and a multiplexed cytokine assay. | ||||
| Funding: | DFG, BMBF, SPARK-BIH, German Centre for Cardiovascular Research | ||||
| Quality control: | titrated antibodies spillover compensation 4 elements EQ bead normalization anchor control based batch normalization cryopreserved antibody cocktails | ||||
Experiment variables
| Sample Type | |
|---|---|
| · Tcells | Tcells_Batch1_T12-1.fcs · Tcells_Batch1_T13-1.fcs · Tcells_Batch1_T14-1.fcs · Tcells_Batch1_T16-1.fcs · Tcells_Batch1_T17-1.fcs · Tcells_Batch1_T18-1.fcs · Tcells_Batch1_T19-1.fcs · Tcells_Batch1_T2.fcs · Tcells_Batch1_T20-1.fcs · Tcells_Batch1_T4.fcs · Tcells_Batch1_T5.fcs · Tcells_Batch1_T6-1.fcs · Tcells_Batch1_T7-1.fcs · Tcells_Batch1_T9-1.fcs · Tcells_Batch2_T1-1.fcs · Tcells_Batch2_T11-1.fcs · Tcells_Batch2_T13-1.fcs · Tcells_Batch2_T15-1.fcs · Tcells_Batch2_T16-1.fcs · Tcells_Batch2_T18-1.fcs · Tcells_Batch2_T19-1.fcs · Tcells_Batch2_T2-1.fcs · Tcells_Batch2_T20-1.fcs · Tcells_Batch2_T3-1.fcs · Tcells_Batch2_T4-1.fcs · Tcells_Batch2_T5-1.fcs · Tcells_Batch2_T6-1.fcs · Tcells_Batch2_T7-1.fcs · Tcells_Batch2_T8-1.fcs · Tcells_Batch2_T9-1.fcs · Tcells_Batch3_T1-1.fcs · Tcells_Batch3_T10-1.fcs · Tcells_Batch3_T12-1.fcs · Tcells_Batch3_T14-1.fcs · Tcells_Batch3_T15-1.fcs · Tcells_Batch3_T16-1.fcs · Tcells_Batch3_T17-1.fcs · Tcells_Batch3_T19-1.fcs · Tcells_Batch3_T2-1.fcs · Tcells_Batch3_T3-1.fcs · Tcells_Batch3_T5-1.fcs · Tcells_Batch3_T7-1.fcs · Tcells_Batch3_T8-1.fcs · Tcells_Batch4_T12-1.fcs · Tcells_Batch4_T14-1.fcs · Tcells_Batch4_T15-1.fcs · Tcells_Batch4_T17-1.fcs · Tcells_Batch4_T19-1.fcs · Tcells_Batch4_T2-1.fcs · Tcells_Batch4_T20-1.fcs · Tcells_Batch4_T3-1.fcs · Tcells_Batch4_T5-1.fcs · Tcells_Batch4_T6-1.fcs · Tcells_Batch4_T7-1.fcs · Tcells_Batch4_T9-1.fcs · Tcells_Batch5_T1-1.fcs · Tcells_Batch5_T10-1.fcs · Tcells_Batch5_T11-1.fcs · Tcells_Batch5_T12-1.fcs · Tcells_Batch5_T13-1.fcs · Tcells_Batch5_T14-1.fcs · Tcells_Batch5_T15-1.fcs · Tcells_Batch5_T17-1.fcs · Tcells_Batch5_T18-1.fcs · Tcells_Batch5_T19-1.fcs · Tcells_Batch5_T3-1.fcs · Tcells_Batch5_T4-1.fcs · Tcells_Batch5_T5-1.fcs · Tcells_Batch5_T6-1.fcs · Tcells_Batch5_T7-1.fcs · Tcells_Batch5_T9-1.fcs · Tcells_Batch6_T10-1.fcs · Tcells_Batch6_T12-1.fcs · Tcells_Batch6_T13-1.fcs · Tcells_Batch6_T14-1.fcs · Tcells_Batch6_T15-1.fcs · Tcells_Batch6_T16-1.fcs · Tcells_Batch6_T17-1.fcs · Tcells_Batch6_T19-1.fcs · Tcells_Batch6_T2-1.fcs · Tcells_Batch6_T20-1.fcs · Tcells_Batch6_T3-1.fcs · Tcells_Batch6_T6-1.fcs · Tcells_Batch6_T8-1.fcs · Tcells_Batch7_T10.fcs · Tcells_Batch7_T11.fcs · Tcells_Batch7_T13.fcs · Tcells_Batch7_T14.fcs · Tcells_Batch7_T17.fcs · Tcells_Batch7_T18.fcs · Tcells_Batch7_T19.fcs · Tcells_Batch7_T2.fcs · Tcells_Batch7_T20.fcs · Tcells_Batch7_T3-1.fcs · Tcells_Batch7_T5.fcs · Tcells_Batch7_T6.fcs · Tcells_Batch7_T7.fcs · Tcells_Batch7_T9.fcs |
| · B-NK-Mono | B-NK-Mono_Batch1_T12-1.fcs · B-NK-Mono_Batch1_T13-1.fcs · B-NK-Mono_Batch1_T14-1.fcs · B-NK-Mono_Batch1_T16-1.fcs · B-NK-Mono_Batch1_T17-1.fcs · B-NK-Mono_Batch1_T18-1.fcs · B-NK-Mono_Batch1_T19-1.fcs · B-NK-Mono_Batch1_T2.fcs · B-NK-Mono_Batch1_T20-1.fcs · B-NK-Mono_Batch1_T4.fcs · B-NK-Mono_Batch1_T5.fcs · B-NK-Mono_Batch1_T6-1.fcs · B-NK-Mono_Batch1_T7-1.fcs · B-NK-Mono_Batch1_T9-1.fcs · B-NK-Mono_Batch2_T1-1.fcs · B-NK-Mono_Batch2_T11-1.fcs · B-NK-Mono_Batch2_T13-1.fcs · B-NK-Mono_Batch2_T15-1.fcs · B-NK-Mono_Batch2_T16-1.fcs · B-NK-Mono_Batch2_T18-1.fcs · B-NK-Mono_Batch2_T19-1.fcs · B-NK-Mono_Batch2_T2-1.fcs · B-NK-Mono_Batch2_T20-1.fcs · B-NK-Mono_Batch2_T3-1.fcs · B-NK-Mono_Batch2_T4-1.fcs · B-NK-Mono_Batch2_T5-1.fcs · B-NK-Mono_Batch2_T6-1.fcs · B-NK-Mono_Batch2_T7-1.fcs · B-NK-Mono_Batch2_T8-1.fcs · B-NK-Mono_Batch2_T9-1.fcs · B-NK-Mono_Batch3_T1-1.fcs · B-NK-Mono_Batch3_T10-1.fcs · B-NK-Mono_Batch3_T12-1.fcs · B-NK-Mono_Batch3_T14-1.fcs · B-NK-Mono_Batch3_T15-1.fcs · B-NK-Mono_Batch3_T16-1.fcs · B-NK-Mono_Batch3_T2-1.fcs · B-NK-Mono_Batch3_T3-1.fcs · B-NK-Mono_Batch3_T5-1.fcs · B-NK-Mono_Batch3_T7-1.fcs · B-NK-Mono_Batch3_T8-1.fcs · B-NK-Mono_Batch4_T15-1.fcs · B-NK-Mono_Batch3_T19-1.fcs · B-NK-Mono_Batch4_T12-1.fcs · B-NK-Mono_Batch4_T14-1.fcs · B-NK-Mono_Batch4_T17-1.fcs · B-NK-Mono_Batch4_T19-1.fcs · B-NK-Mono_Batch4_T2-1.fcs · B-NK-Mono_Batch4_T20-1.fcs · B-NK-Mono_Batch4_T3-1.fcs · B-NK-Mono_Batch4_T5-1.fcs · B-NK-Mono_Batch4_T6-1.fcs · B-NK-Mono_Batch4_T7-1.fcs · B-NK-Mono_Batch4_T9-1.fcs · B-NK-Mono_Batch5_T1-1.fcs · B-NK-Mono_Batch5_T10-1.fcs · B-NK-Mono_Batch5_T11-1.fcs · B-NK-Mono_Batch5_T12-1.fcs · B-NK-Mono_Batch5_T13-1.fcs · B-NK-Mono_Batch5_T14-1.fcs · B-NK-Mono_Batch5_T15-1.fcs · B-NK-Mono_Batch5_T17-1.fcs · B-NK-Mono_Batch5_T18-1.fcs · B-NK-Mono_Batch5_T19-1.fcs · B-NK-Mono_Batch5_T3-1.fcs · B-NK-Mono_Batch5_T4-1.fcs · B-NK-Mono_Batch5_T5-1.fcs · B-NK-Mono_Batch5_T6-1.fcs · B-NK-Mono_Batch5_T7-1.fcs · B-NK-Mono_Batch5_T9-1.fcs · B-NK-Mono_Batch6_T10-1.fcs · B-NK-Mono_Batch6_T12-1.fcs · B-NK-Mono_Batch6_T13-1.fcs · B-NK-Mono_Batch6_T14-1.fcs · B-NK-Mono_Batch6_T15-1.fcs · B-NK-Mono_Batch6_T16-1.fcs · B-NK-Mono_Batch6_T17-1.fcs · B-NK-Mono_Batch6_T19-1.fcs · B-NK-Mono_Batch6_T2-1.fcs · B-NK-Mono_Batch6_T20-1.fcs · B-NK-Mono_Batch6_T3-1.fcs · B-NK-Mono_Batch6_T6-1.fcs · B-NK-Mono_Batch6_T8-1.fcs · B-NK-Mono_Batch7_T10.fcs · B-NK-Mono_Batch7_T11.fcs · B-NK-Mono_Batch7_T13.fcs · B-NK-Mono_Batch7_T14.fcs · B-NK-Mono_Batch7_T17.fcs · B-NK-Mono_Batch7_T18.fcs · B-NK-Mono_Batch7_T19.fcs · B-NK-Mono_Batch7_T2.fcs · B-NK-Mono_Batch7_T20.fcs · B-NK-Mono_Batch7_T3-1.fcs · B-NK-Mono_Batch7_T5.fcs · B-NK-Mono_Batch7_T6.fcs · B-NK-Mono_Batch7_T7.fcs · B-NK-Mono_Batch7_T9.fcs |
| · Bcells | Bcells_Batch1_T12-1.fcs · Bcells_Batch1_T13-1.fcs · Bcells_Batch1_T14-1.fcs · Bcells_Batch1_T16-1.fcs · Bcells_Batch1_T17-1.fcs · Bcells_Batch1_T18-1.fcs · Bcells_Batch1_T19-1.fcs · Bcells_Batch1_T2.fcs · Bcells_Batch1_T20-1.fcs · Bcells_Batch1_T4.fcs · Bcells_Batch1_T5.fcs · Bcells_Batch1_T6-1.fcs · Bcells_Batch1_T7-1.fcs · Bcells_Batch1_T9-1.fcs · Bcells_Batch2_T1-1.fcs · Bcells_Batch2_T11-1.fcs · Bcells_Batch2_T13-1.fcs · Bcells_Batch2_T15-1.fcs · Bcells_Batch2_T16-1.fcs · Bcells_Batch2_T18-1.fcs · Bcells_Batch2_T19-1.fcs · Bcells_Batch2_T2-1.fcs · Bcells_Batch2_T20-1.fcs · Bcells_Batch2_T3-1.fcs · Bcells_Batch2_T4-1.fcs · Bcells_Batch2_T5-1.fcs · Bcells_Batch2_T6-1.fcs · Bcells_Batch2_T7-1.fcs · Bcells_Batch2_T8-1.fcs · Bcells_Batch2_T9-1.fcs · Bcells_Batch3_T1-1.fcs · Bcells_Batch3_T10-1.fcs · Bcells_Batch3_T12-1.fcs · Bcells_Batch3_T14-1.fcs · Bcells_Batch3_T15-1.fcs · Bcells_Batch3_T16-1.fcs · Bcells_Batch3_T17-1.fcs · Bcells_Batch3_T19-1.fcs · Bcells_Batch3_T2-1.fcs · Bcells_Batch3_T3-1.fcs · Bcells_Batch3_T5-1.fcs · Bcells_Batch3_T7-1.fcs · Bcells_Batch3_T8-1.fcs · Bcells_Batch4_T12-1.fcs · Bcells_Batch4_T14-1.fcs · Bcells_Batch4_T15-1.fcs · Bcells_Batch4_T17-1.fcs · Bcells_Batch4_T19-1.fcs · Bcells_Batch4_T2-1.fcs · Bcells_Batch4_T20-1.fcs · Bcells_Batch4_T3-1.fcs · Bcells_Batch4_T5-1.fcs · Bcells_Batch4_T6-1.fcs · Bcells_Batch4_T7-1.fcs · Bcells_Batch4_T9-1.fcs · Bcells_Batch5_T1-1.fcs · Bcells_Batch5_T10-1.fcs · Bcells_Batch5_T11-1.fcs · Bcells_Batch5_T12-1.fcs · Bcells_Batch5_T13-1.fcs · Bcells_Batch5_T14-1.fcs · Bcells_Batch5_T15-1.fcs · Bcells_Batch5_T17-1.fcs · Bcells_Batch5_T18-1.fcs · Bcells_Batch5_T19-1.fcs · Bcells_Batch5_T3-1.fcs · Bcells_Batch5_T4-1.fcs · Bcells_Batch5_T5-1.fcs · Bcells_Batch5_T6-1.fcs · Bcells_Batch5_T7-1.fcs · Bcells_Batch5_T9-1.fcs · Bcells_Batch6_T10-1.fcs · Bcells_Batch6_T12-1.fcs · Bcells_Batch6_T13-1.fcs · Bcells_Batch6_T14-1.fcs · Bcells_Batch6_T15-1.fcs · Bcells_Batch6_T16-1.fcs · Bcells_Batch6_T17-1.fcs · Bcells_Batch6_T19-1.fcs · Bcells_Batch6_T2-1.fcs · Bcells_Batch6_T20-1.fcs · Bcells_Batch6_T3-1.fcs · Bcells_Batch6_T6-1.fcs · Bcells_Batch6_T8-1.fcs · Bcells_Batch7_T10.fcs · Bcells_Batch7_T11.fcs · Bcells_Batch7_T13.fcs · Bcells_Batch7_T14.fcs · Bcells_Batch7_T17.fcs · Bcells_Batch7_T18.fcs · Bcells_Batch7_T19.fcs · Bcells_Batch7_T2.fcs · Bcells_Batch7_T20.fcs · Bcells_Batch7_T3-1.fcs · Bcells_Batch7_T5.fcs · Bcells_Batch7_T6.fcs · Bcells_Batch7_T7.fcs · Bcells_Batch7_T9.fcs |
