Experiment Overview
| Repository ID: | FR-FCM-ZY69 | Experiment name: | MC38 Checkpoint Blockade | MIFlowCyt score: | 46.25% |
| Primary researcher: | Spencer Wei | PI/manager: | Spencer Wei | Uploaded by: | Spencer Wei |
| Experiment dates: | 2017-05-02 - | Dataset uploaded: | May 2017 | Last updated: | Aug 2017 |
| Keywords: | [mass cytometry] [CyTOF] [mouse] [tumor] [PD-1] [TIL] [CTLA-4] [checkpoint blockade] | Manuscripts: | |||
| Organizations: |
The University of Texas MD Anderson Cancer Center, Immunology, Houston, Texas (USA)
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| Purpose: | To comprehensively profile tumor infiltrating T cells and identify checkpoint blockade responsive T cell subsets by mass cytometry. | ||||
| Conclusion: | None | ||||
| Comments: | Individual tumor infiltrates were analyzed by mass cytometry. TIL samples were barcoded and acquired simultaneously. | ||||
| Funding: | Not disclosed | ||||
| Quality control: | None | ||||
Experiment variables
| Sample Type | |
|---|---|
| · Bead normalized and debarcoded un-gated data | c01_2016-0829-MC38AbTx_norm.fcs · c02_2016-0829-MC38AbTx_norm.fcs · c03_2016-0829-MC38AbTx_norm.fcs · c04_2016-0829-MC38AbTx_norm.fcs · c05_2016-0829-MC38AbTx_norm.fcs · c06_2016-0829-MC38AbTx_norm.fcs · c07_2016-0829-MC38AbTx_norm.fcs · c08_2016-0829-MC38AbTx_norm.fcs · c09_2016-0829-MC38AbTx_norm.fcs · c10_2016-0829-MC38AbTx_norm.fcs · c11_2016-0829-MC38AbTx_norm.fcs · c12_2016-0829-MC38AbTx_norm.fcs · c13_2016-0829-MC38AbTx_norm.fcs · c14_2016-0829-MC38AbTx_norm.fcs · c15_2016-0829-MC38AbTx_norm.fcs · c16_2016-0829-MC38AbTx_norm.fcs · c17_2016-0829-MC38AbTx_norm.fcs · c18_2016-0829-MC38AbTx_norm.fcs · c19_2016-0829-MC38AbTx_norm.fcs · c20_2016-0829-MC38AbTx_norm.fcs |
| · T cell gated data with PhenoGraph and t-SNE parameters | 20160829 MC38 AbTx2 CD3 C312.fcs · 20160829 MC38 AbTx2 CD3 C313.fcs · 20160829 MC38 AbTx2 CD3 C314.fcs · 20160829 MC38 AbTx2 CD3 C315.fcs · 20160829 MC38 AbTx2 CD3 C316.fcs · 20160829 MC38 AbTx2 CD3 C317.fcs · 20160829 MC38 AbTx2 CD3 C318.fcs · 20160829 MC38 AbTx2 CD3 C319.fcs · 20160829 MC38 AbTx2 CD3 C320.fcs · 20160829 MC38 AbTx2 CD3 C321.fcs · 20160829 MC38 AbTx2 CD3 C322.fcs · 20160829 MC38 AbTx2 CD3 C323.fcs · 20160829 MC38 AbTx2 CD3 C324.fcs · 20160829 MC38 AbTx2 CD3 C325.fcs · 20160829 MC38 AbTx2 CD3 C326.fcs · 20160829 MC38 AbTx2 CD3 C327.fcs · 20160829 MC38 AbTx2 CD3 C328.fcs · 20160829 MC38 AbTx2 CD3 C329.fcs · 20160829 MC38 AbTx2 CD3 C330.fcs · 20160829 MC38 AbTx2 CD3 C331.fcs |
| Conditions | |
|---|---|
| · Control | 20160829 MC38 AbTx2 CD3 C312.fcs · 20160829 MC38 AbTx2 CD3 C313.fcs · 20160829 MC38 AbTx2 CD3 C314.fcs · 20160829 MC38 AbTx2 CD3 C315.fcs · c01_2016-0829-MC38AbTx_norm.fcs · c02_2016-0829-MC38AbTx_norm.fcs · c03_2016-0829-MC38AbTx_norm.fcs · c04_2016-0829-MC38AbTx_norm.fcs |
| · anti-CTLA-4 | 20160829 MC38 AbTx2 CD3 C316.fcs · 20160829 MC38 AbTx2 CD3 C317.fcs · 20160829 MC38 AbTx2 CD3 C318.fcs · 20160829 MC38 AbTx2 CD3 C319.fcs · 20160829 MC38 AbTx2 CD3 C320.fcs · 20160829 MC38 AbTx2 CD3 C321.fcs · 20160829 MC38 AbTx2 CD3 C322.fcs · 20160829 MC38 AbTx2 CD3 C323.fcs · c05_2016-0829-MC38AbTx_norm.fcs · c06_2016-0829-MC38AbTx_norm.fcs · c07_2016-0829-MC38AbTx_norm.fcs · c08_2016-0829-MC38AbTx_norm.fcs · c09_2016-0829-MC38AbTx_norm.fcs · c10_2016-0829-MC38AbTx_norm.fcs · c11_2016-0829-MC38AbTx_norm.fcs · c12_2016-0829-MC38AbTx_norm.fcs |
| · anti-PD-1 | 20160829 MC38 AbTx2 CD3 C324.fcs · 20160829 MC38 AbTx2 CD3 C325.fcs · 20160829 MC38 AbTx2 CD3 C326.fcs · 20160829 MC38 AbTx2 CD3 C327.fcs · 20160829 MC38 AbTx2 CD3 C328.fcs · 20160829 MC38 AbTx2 CD3 C329.fcs · 20160829 MC38 AbTx2 CD3 C330.fcs · 20160829 MC38 AbTx2 CD3 C331.fcs · c13_2016-0829-MC38AbTx_norm.fcs · c14_2016-0829-MC38AbTx_norm.fcs · c15_2016-0829-MC38AbTx_norm.fcs · c16_2016-0829-MC38AbTx_norm.fcs · c17_2016-0829-MC38AbTx_norm.fcs · c18_2016-0829-MC38AbTx_norm.fcs · c19_2016-0829-MC38AbTx_norm.fcs · c20_2016-0829-MC38AbTx_norm.fcs |
