FlowRepository

Experiment Overview

Repository ID:	FR-FCM-ZYTT	Experiment name:	Predicting cell populations in single cell mass cytometry data	MIFlowCyt score:	27.00%
Primary researcher:	Tamim Abdelaal	PI/manager:	Tamim Abdelaal	Uploaded by:	Tamim Abdelaal
Experiment dates:	2017-10-02 -	Dataset uploaded:	Dec 2018	Last updated:	Dec 2018
Keywords:	[mass cytometry] [machine learning] [single-cell] [Cell population prediction]		Manuscripts:	[30861637]
Organizations:	Delft University of Technology, Delft Bioinformatics Lab, Delft, Zuid Holland (Netherlands)
Purpose:	Automatic prediction of cell populations in mass cytometry data, using supervised learning algorithms
Conclusion:	Linear Discriminant Analysis classifier can accurately predict abundant and rare cell populations, and outperforms semi-supervised and deep learning methods.
Comments:	All data files are uploaded in CSV format.
Funding:	European Commission of a H2020 MSCA award under proposal number 675743 (ISPIC)
Quality control:	None

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The following open access article describes how to upload and annotate flow cytometry data sets: Spidlen J, Breuer K and Brinkman R. Preparing a Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) Compliant Manuscript Using the International Society for Advancement of Cytometry (ISAC) FCS File Repository (FlowRepository.org). Current Protocols in Cytometry, UNIT 10.18, July 2012.
We also have a Quick start guide and a FAQ section.
You may download slides from our Workshop at CYTO 2012: Publishing MIFlowCyt Compliant Data to ISAC’s FlowRepository.org for Cytometry A and Other Journals
Additional links and help options are listed in our support page.
You can contact us for support regarding technical issues or by sending comments about how to make your experiment or FlowRepository in general better. Leave feedback or ask questions by filling out a support ticket.

Citing FlowRepository

Please reference us by citing:

Spidlen J, Breuer K, Rosenberg C, Kotecha N and Brinkman RR. FlowRepository - A Resource of Annotated Flow Cytometry Datasets Associated with Peer-reviewed Publications. Cytometry A. 2012 Sep; 81(9):727-31..

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FCS files
- Download FCS Files
Attachments
- AML_benchmark.csv
- BMMC_benchmark.csv
- PANORAMA_Labels01.csv
- PANORAMA_Labels02.csv
- PANORAMA_Labels03.csv
- PANORAMA_Labels04.csv
- PANORAMA_Labels05.csv
- PANORAMA_Labels06.csv
- PANORAMA_Labels07.csv
- PANORAMA_Labels08.csv
- PANORAMA_Labels09.csv
- PANORAMA_Labels10.csv
- PANORAMA_Samples01.csv
- PANORAMA_Samples02.csv
- PANORAMA_Samples03.csv
- PANORAMA_Samples04.csv
- PANORAMA_Samples05.csv
- PANORAMA_Samples06.csv
- PANORAMA_Samples07.csv
- PANORAMA_Samples08.csv
- PANORAMA_Samples09.csv
- PANORAMA_Samples10.csv
- Multi-Center_labels01.csv
- Multi-Center_labels02.csv
- Multi-Center_labels03.csv
- Multi-Center_labels04.csv
- Multi-Center_labels05.csv
- Multi-Center_labels06.csv
- Multi-Center_labels07.csv
- Multi-Center_labels08.csv
- Multi-Center_labels09.csv
- Multi-Center_labels10.csv
- Multi-Center_labels11.csv
- Multi-Center_labels12.csv
- Multi-Center_labels13.csv
- Multi-Center_labels14.csv
- Multi-Center_labels15.csv
- Multi-Center_labels16.csv
- Multi-Center_sample01.csv
- Multi-Center_sample02.csv
- Multi-Center_sample03.csv
- Multi-Center_sample04.csv
- Multi-Center_sample05.csv
- Multi-Center_sample06.csv
- Multi-Center_sample07.csv
- Multi-Center_sample08.csv
- Multi-Center_sample09.csv
- Multi-Center_sample10.csv
- Multi-Center_sample11.csv
- Multi-Center_sample12.csv
- Multi-Center_sample13.csv
- Multi-Center_sample14.csv
- Multi-Center_sample15.csv
- Multi-Center_sample16.csv
- HMIS1_Labels01.csv
- HMIS1_Labels02.csv
- HMIS1_Labels03.csv
- HMIS1_Labels04.csv
- HMIS1_Labels05.csv
- HMIS1_Labels06.csv
- HMIS1_Labels07.csv
- HMIS1_Labels08.csv
- HMIS1_Labels09.csv
- HMIS1_Labels10.csv
- HMIS1_Labels11.csv
- HMIS1_Labels12.csv
- HMIS1_Labels13.csv
- HMIS1_Labels14.csv
- HMIS1_Labels15.csv
- HMIS1_Labels16.csv
- HMIS1_Labels17.csv
- HMIS1_Labels18.csv
- HMIS1_Labels19.csv
- HMIS1_Labels20.csv
- HMIS1_Labels21.csv
- HMIS1_Labels22.csv
- HMIS1_Labels23.csv
- HMIS1_Labels24.csv
- HMIS1_Labels25.csv
- HMIS1_Labels26.csv
- HMIS1_Labels27.csv
- HMIS1_Labels28.csv
- HMIS1_Labels29.csv
- HMIS1_Labels30.csv
- HMIS1_Labels31.csv
- HMIS1_Labels32.csv
- HMIS1_Labels33.csv
- HMIS1_Labels34.csv
- HMIS1_Labels35.csv
- HMIS1_Labels36.csv
- HMIS1_Labels37.csv
- HMIS1_Labels38.csv
- HMIS1_Labels39.csv
- HMIS1_Labels40.csv
- HMIS1_Labels41.csv
- HMIS1_Labels42.csv
- HMIS1_Labels43.csv
- HMIS1_Labels44.csv
- HMIS1_Labels45.csv
- HMIS1_Labels46.csv
- HMIS1_Labels47.csv
- HMIS_Samples01_CeD.csv
- HMIS_Samples02_CeD.csv
- HMIS_Samples03_CeD.csv
- HMIS_Samples04_CeD.csv
- HMIS_Samples05_Ctrl.csv
- HMIS_Samples06_Ctrl.csv
- HMIS_Samples07_Ctrl.csv
- HMIS_Samples08_Ctrl.csv
- HMIS_Samples09_Ctrl.csv
- HMIS_Samples10_Ctrl.csv
- HMIS_Samples11_Ctrl.csv
- HMIS_Samples12_CeD.csv
- HMIS_Samples13_CeD.csv
- HMIS_Samples14_CeD.csv
- HMIS_Samples15_CeD.csv
- HMIS_Samples16_CeD.csv
- HMIS_Samples17_CeD.csv
- HMIS_Samples18_CeD.csv
- HMIS_Samples19_CeD.csv
- HMIS_Samples20_CeD.csv
- HMIS_Samples21_Ctrl.csv
- HMIS_Samples22_Ctrl.csv
- HMIS_Samples23_Ctrl.csv
- HMIS_Samples24_Ctrl.csv
- HMIS_Samples25_Ctrl.csv
- HMIS_Samples26_Ctrl.csv
- HMIS_Samples27_Ctrl.csv
- HMIS_Samples28_RCDII.csv
- HMIS_Samples29_RCDII.csv
- HMIS_Samples30_RCDII.csv
- HMIS_Samples31_RCDII.csv
- HMIS_Samples32_RCDII.csv
- HMIS_Samples33_RCDII.csv
- HMIS_Samples34_CD.csv
- HMIS_Samples35_CD.csv
- HMIS_Samples36_CD.csv
- HMIS_Samples37_CD.csv
- HMIS_Samples38_CD.csv
- HMIS_Samples39_CD.csv
- HMIS_Samples40_CD.csv
- HMIS_Samples41_CD.csv
- HMIS_Samples42_CD.csv
- HMIS_Samples43_CD.csv
- HMIS_Samples44_CD.csv
- HMIS_Samples45_CD.csv
- HMIS_Samples46_CD.csv
- HMIS_Samples47_CD.csv
- HMIS2_Labels01.csv
- HMIS2_Labels02.csv
- HMIS2_Labels03.csv
- HMIS2_Labels04.csv
- HMIS2_Labels05.csv
- HMIS2_Labels06.csv
- HMIS2_Labels07.csv
- HMIS2_Labels08.csv
- HMIS2_Labels09.csv
- HMIS2_Labels10.csv
- HMIS2_Labels11.csv
- HMIS2_Labels12.csv
- HMIS2_Labels13.csv
- HMIS2_Labels14.csv
- HMIS2_Labels15.csv
- HMIS2_Labels16.csv
- HMIS2_Labels17.csv
- HMIS2_Labels18.csv
- HMIS2_Labels19.csv
- HMIS2_Labels20.csv
- HMIS2_Labels21.csv
- HMIS2_Labels22.csv
- HMIS2_Labels23.csv
- HMIS2_Labels24.csv
- HMIS2_Labels25.csv
- HMIS2_Labels26.csv
- HMIS2_Labels27.csv
- HMIS2_Labels28.csv
- HMIS2_Labels29.csv
- HMIS2_Labels30.csv
- HMIS2_Labels31.csv
- HMIS2_Labels32.csv
- HMIS2_Labels33.csv
- HMIS2_Labels34.csv
- HMIS2_Labels35.csv
- HMIS2_Labels36.csv
- HMIS2_Labels37.csv
- HMIS2_Labels38.csv
- HMIS2_Labels39.csv
- HMIS2_Labels40.csv
- HMIS2_Labels41.csv
- HMIS2_Labels42.csv
- HMIS2_Labels43.csv
- HMIS2_Labels44.csv
- HMIS2_Labels45.csv
- HMIS2_Labels46.csv
- HMIS2_Labels47.csv

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